What Is The Role Of The AT Rich Regions In Initiation Of DNA Replication Quizlet?

DNA replication is initiated by

the binding of DnaA proteins to sequences within the origin known as DnaA box sequences

. … Following separation of the AT-rich region, the DnaA proteins, with the help of DnaC proteins, recruit DNA helicase proteins to this site.

What is the role of the AT rich regions in initiation of DNA replication?

The

high AT-content results in the low thermodynamic stability of

the region which accounts for its role in the process of replication initiation. At the AT-rich regions, the initial DNA helix destabilization (opening) is induced by binding an initiator protein to its respective recognition sequences situated nearby.

What is the significance of the AT rich region within the Tandem 13-mer sequence in oriC quizlet?

What is the significance of the AT rich region within the tandem 13-mer sequence in OriC?

DNA polymerase III is able to remove RNA primers due to its 5′ to 3′ exonuclease activity

. DNA replication occurs in a 3′-5′ direction in both the leading and lagging strands.

Why is the origin of replication usually rich in adenine and thymine bases?

Additionally, origin sequences commonly have

high AT-content

across all kingdoms, since repeats of adenine and thymine are easier to separate because their base stacking interactions are not as strong as those of guanine and cytosine. DNA replication is divided into different stages.

What is the role of DnaA in DNA replication?

DnaA is a protein

that activates initiation of DNA replication in bacteria

. It is a replication initiation factor which promotes the unwinding of DNA at oriC. … Binding of DnaA leads to strand separation at the 13-mer repeats. This binding causes the DNA to loop in preparation for melting open by the helicase DnaB.

What is an AT rich sequence?

A nucleic acid sequence that contains an above average number of ADENINE and THYMINE bases

.

Why is it important that the origin of replication to be a sequence rich in AT pairs rather than a sequence rich in GC pairs?

This DNA contains short sequences that attract initiator proteins, as well as stretches of DNA that are especially easy to open. … Therefore, DNA rich in A-T base

pairs is relatively easy to pull apart

, and regions of DNA enriched in A-T pairs are typically found at replication origins.

Why is an AT rich region part of the E coli oriC?

Why is an AT rich region part of the E. coli oriC? A)

DnaA proteins bind to AT rich sites

. … DnaC proteins bind to AT rich sites.

What is a copy of DNA called?

Replication

is the process by which a double-stranded DNA molecule is copied to produce two identical DNA molecules. DNA replication is one of the most basic processes that occurs within a cell.

What is the name of the regions at the ends of eukaryotic chromosomes?

The ends of eukaryotic chromosomes are called

telomeres

.

What is the purpose of the origin of replication?

The ori is the place

where DNA replication begins, enabling a plasmid to reproduce itself as it must to survive within cells

. The replicons of plasmids are generally different from the those used to replicate the host’s chromosomal DNA, but they still rely on the host machinery to make additional copies.

What happens at the origin of replication?

An origin of replication is

a sequence of DNA at which replication is initiated on a chromosome, plasmid or virus

. … Larger DNAs have many origins, and DNA replication is initiated at all of them; otherwise, if all replication had to proceed from a single origin, it would take too long to replicate the entire DNA mass.

Why do replication origins tend to be at rich regions?

A stretch of ~20 bp A+T-rich region (called a DNA unwinding element, or DUE) is common within replication origins, most likely due to the fact

that A+T-rich regions are easier to melt than G+C rich sequences

(Inman, 1966; Kowalski and Eddy, 1989).

Does DnaA bind DnaB?

Cross-linking studies confirm that

DnaA and DnaB proteins interact directly

. These results provide the first direct evidence that one of the roles of DnaA protein is to act as a site for binding of DnaB protein to the DNA and perhaps orients DnaB helicase to account for the directionality of replication fork movement.

What is the role of initiator protein in DNA replication?

In its classical definition, the initiator is a

protein that binds to the REPLICATOR and serves to initiate DNA replication

(Fig. … In addition to recognition, melting and recruitment, the proteins in this group also function as the replicative DNA HELICASE that unwinds the DNA in front of the replication fork.

What does DnaA stand for?

What are at regions of DNA?

Regulatory regions in DNA:

promoters, enhancers, silencers, and insulators

.

What is the difference between origin of replication and promoter?

Origin of replication is the site where replication initiates, whereas promoter is

the site where RNA polymerase binds and transcription starts

.

What does DNA polymerase need to initiate DNA strand synthesis?

DNA polymerase can initiate DNA strand synthesis

without any additional enzymes required

. What enzyme(s) is/are responsible for removal of RNA primers and joining of Okazaki fragments? DNA polymerase III is functional, but seems to exhibit extremely low processivity.

What is the role of the RNA primers during DNA replication in E coli?

Short fragments of RNA serve as

primers that can be extended by DNA polymerase

. To form a continuous lagging strand of DNA, the RNA primers must eventually be removed from the Okazaki fragments and replaced with DNA. In E.

What is oriC region?

The oriC regions of E. coli, Vibrio harveyi, and other enteric bacteria are

located between gidA and mioC far upstream from the dnaA gene

(56). Caulobacter crescentus oriC is located between hemE and rpsT about 2 kb away from dnaA, which is separated from the dnaN, recF, gyrB cluster by a distance of 150 kb (55).

What region of the chromosome in E coli is involved in the replication termination process quizlet?

Termination of DNA replication occurs when the two forks meet and fuse, creating two separate double-stranded DNA molecules. In the well-studied bacteria Escherichia coli and Bacillus subtilis, this occurs in

the terminus region

, which is situated diametrically opposite the origin.

Which protein is responsible for initial denaturation of oriC in E coli?

Which protein is responsible for initial denaturation of oriC in E. coli?

The DnaA protein

initially binds to the four 9-bp repeats, and then denatures the A:T rich 13-bp repeats. Which enzyme is responsible for relieving the torsional stress caused by DNA unwinding in the process of DNA replication?

How is DNA like a zipper?

DNA is made of two long strands that wrap around each other to make the famous double helix. Each strand is composed of a sequence of molecules called nucleotides. Bases are a part of the nucleotides. … Because of how the bases pair up,

the two strands come together

like a molecular zipper.

Does helicase need ATP?

There are DNA and RNA helicases. … The process of breaking the hydrogen bonds between the nucleotide base pairs in double-stranded DNA requires energy. To break the bonds, helicases

use the energy stored in a molecule

called ATP, which serves as the energy currency of cells.

What is mutation in biology?

Mutations. Definition. A Mutation occurs

when a DNA gene is damaged or changed in such a way as to alter the genetic message carried by that gene

. A Mutagen is an agent of substance that can bring about a permanent alteration to the physical composition of a DNA gene such that the genetic message is changed.

How does telomerase play a role?

In egg and sperm cells, an enzyme called telomerase keeps adding more of the repeating sequence onto the end of DNA strands, so that the telomeres in these cells don’t shorten. … In this sense, telomeres also play a

critical role in preventing cancer

, which is uncontrolled cell division.

What is the role of topoisomerase?

Topoisomerases (or DNA topoisomerases) are

enzymes that participate in the overwinding or underwinding of DNA

. … In order to prevent and correct these types of topological problems caused by the double helix, topoisomerases bind to DNA and cut the phosphate backbone of either one or both the DNA strands.

How is origin of replication regulated?

In all cells studied, DNA replication is regulated by

recruiting the replication machinery or “replisome” to sites called origins on the chromosome

(Figure 1). … The recruitment process is called initiation, whereas subsequent replication of the DNA by the replisome is called elongation.

Why do eukaryotes have end shortening problem in the chromosomes?

Unlike bacterial chromosomes, the chromosomes of eukaryotes are linear (rod-shaped), meaning that they have ends. These ends pose a problem for DNA replication.

The DNA at the very end of the chromosome cannot be fully copied in each round of replication

, resulting in a slow, gradual shortening of the chromosome.

What is the function of a eukaryotic chromosome?

Eukaryotic chromosomes are found in the cell’s nucleus.

This nucleus is the “control center” of the cell that

stores all the cell’s genetic information, or DNA

.

What is origin of replication in E coli?

Replication in E. coli begins at a specific

sequence called oriC

. This is the single origin of replication on this chromosome, and DNA synthesis proceeds in both directions from it (Figure 6.7). The sequence oriC was identified by its ability to confer the capacity for autonomous replication on a DNA molecule.

What is the purpose of the origin of replication on the plasmid that was used for cloning?

Cloning vectors

Their origins of replication enable

the plasmids to replicate independently of the bacterial cell cycle

, which means that a large number of copies are produced per cell.

What is origin of replication in a chromosome Ori Why is origin of replication required to facilitate cloning into a vector?

Ori is a sequence from where replication starts and any piece of DNA to

replicate in the host cell needs to be linked to it

.It also controls the copy number of the linked DNA.

What is the role of the AT rich regions in initiation of DNA replication?

The

high AT-content results in the low thermodynamic stability of

the region which accounts for its role in the process of replication initiation. At the AT-rich regions, the initial DNA helix destabilization (opening) is induced by binding an initiator protein to its respective recognition sequences situated nearby.

Where does DNA replication take place?

DNA replication occurs

in the cytoplasm of prokaryotes and in the nucleus of eukaryotes

. Regardless of where DNA replication occurs, the basic process is the same. The structure of DNA lends itself easily to DNA replication. Each side of the double helix runs in opposite (anti-parallel) directions.

What happens to DNA after replication?

Finally, an enzyme called DNA ligase

^?

seals up the sequence of DNA into two continuous double strands. The result of DNA replication is two DNA molecules consisting of one new and one old chain of nucleotides. … Following replication

the new DNA automatically winds up into a double helix.

What is the role of SeqA in E coli?

The Escherichia coli SeqA protein

contributes to regulation of chromosome replication by preventing re-initiation at newly replicated origins

. SeqA protein binds to new DNA which is hemimethylated at the adenine of GATC sequences. Most of the cellular SeqA is found complexed with the new DNA at the replication forks.

What is the function of initiator protein?

The initiator proteins are the proteins that

recognize a specific DNA sequence within the origin of replication

. The origin of replication is the site where the helicase attaches to the template strand and starts to unwind the DNA into two strands.

How is initiation at oriC regulated in bacteria?

When enough ATP-DnaA has accumulated in the cell, an active initiation complex can be formed at the origin resulting in strand opening and recruitment of the replicative helicase. In Escherichia coli, oriC activity is

directly regulated by DNA methylation and specific oriC-binding proteins

.